Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0801468.10bjl with 10 members (domain-containing protein)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires /

Glires /

Completeness score: 0.67

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This HOG has 61 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0801468.10bjl	1067	134	domain-containing protein
2	HOG:E0801468.10bjl.5087b	30	3	domain-containing protein
3	HOG:E0801468.10bjl.5088a	20	2	domain-containing protein
4	HOG:E0801468.10bjl.5085b	20	2	domain-containing protein
5	HOG:E0801468.10bjl.5085a	20	2	domain-containing protein
6	HOG:E0801468.10bjl.5084b	20	2	domain-containing protein
7	HOG:E0801468.2zl	16	2	domain-containing protein
8	HOG:E0801468.2gy	16	2	domain-containing protein
9	HOG:E0801468.9jyi	13	2	domain-containing protein
10	HOG:E0801468.10ppc.6866b	10	1	domain-containing protein
11	HOG:E0801468.10bjl.5088b	10	1	domain-containing protein
12	HOG:E0801468.10bjl.5086b	10	1	domain-containing protein
13	HOG:E0801468.10bjl.5086a	10	1	domain-containing protein
14	HOG:E0801468.10bjl.5084a	10	1	domain-containing protein
15	HOG:E0827944	9	6	Deleted in malignant brain tumors
16	HOG:E0801468.10bjl.5087a	8	1	domain-containing protein
17	HOG:E0533794	6	3	deleted in malignant brain tumors
18	HOG:E0777859.4h.9a	5	1	SRCR domain-containing protein
19	HOG:E0777859.2c	5	1	SRCR domain-containing protein
20	HOG:E0777859.3k	4	2	SRCR domain-containing protein
21	HOG:E0713068.1a	4	2	deleted in malignant brain tumors
22	HOG:E0671635.1b	4	1	deleted in malignant brain tumors
23	HOG:E0536491.2a	4	2	Derived by automated computational analysis using gene prediction method Gnomon
24	HOG:E0665357.1a	3	1	deleted in malignant brain tumors
25	HOG:E0536491.3a.3d	3	1	Derived by automated computational analysis using gene prediction method Gnomon

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